Bash Tutorial
• 10 min read
Code below does two things. First, it checks for a directory of a project and creates one if it doesn't exist. Then, it checks for a repo in the directory and creates one if it doesn't exist.
echo "Using conditional statement to create a project directory and project"
# Variable section
export project_dir=$HOME/vscode # change vscode to different name to test git clone
export project=$project_dir/congenial-tribble # change APCSP to name of project from git clone
export project_repo="https://github.com/horizon-ab/congenial-tribble" # change to project of choice
cd ~ # start in home directory
# Conditional block to make a project directory
if [ ! -d $project_dir ]
then
echo "Directory $project_dir does not exists... makinng directory $project_dir"
mkdir -p $project_dir
fi
echo "Directory $project_dir exists."
# Conditional block to git clone a project from project_repo
if [ ! -d $project ]
then
echo "Directory $project does not exists... cloning $project_repo"
cd $project_dir
git clone $project_repo
cd ~
fi
echo "Directory $project exists."
echo "Navigate to project, then navigate to area wwhere files were cloned"
cd $project
pwd
echo ""
echo "list top level or root of files with project pulled from github"
ls
echo ""
echo "list again with hidden files pulled from github"
ls -a # hidden files flag, many shell commands have flags
echo ""
echo "list all files in long format"
ls -al # all files and long listing
echo "Look for posts"
export posts=$project/_posts # _posts inside project
cd $posts # this should exist per fastpages
pwd # present working directory
ls -l # list posts
echo "Look for notebooks"
export notebooks=$project/_notebooks # _notebooks is inside project
cd $notebooks # this should exist per fastpages
pwd # present working directory
ls -l # list notebooks
echo "Look for images in notebooks, print working directory, list files"
cd $notebooks/images # this should exist per fastpages
pwd
ls -l
"cat" => reads data from a file and gives content as output
echo "Navigate to project, then navigate to area wwhere files were cloned"
cd $project
echo "show the contents of README.md"
echo ""
cat README.md # show contents of file, in this case markdown
echo ""
echo "end of README.md"
echo "Show the shell environment variables, key on left of equal value on right"
echo ""
env
cd $project
echo ""
echo "show the secrets of .git"
cd .git
ls -l
echo ""
echo "look at config file"
cat config
echo "Use git fetch to check update repositories"
# Repository to check
export repository="congenial-tribble"
cd $HOME/vscode/$repository
git fetch origin
git merge origin master
Use git fetch to check update repositories Already up to date.
Checking Python
python3 --version
python2 --version
Python 3.10.5 Python 2.7.18
Checking Jupyter
jupyter --version
jupyter kernelspec list
Selected Jupyter core packages... IPython : 8.2.0 ipykernel : 6.9.1 ipywidgets : 7.6.5 jupyter_client : 6.1.12 jupyter_core : 4.9.2 jupyter_server : 1.13.5 jupyterlab : 3.3.2 nbclient : 0.5.13 nbconvert : 6.4.4 nbformat : 5.3.0 notebook : 6.4.8 qtconsole : 5.3.0 traitlets : 5.1.1 Available kernels: python3105jvsc74a57bd0aee8b7b246df8f9039afb4144a1f6fd8d2ca17a180786b69acc140d282b71a49 /Users/baileysay/.vscode/extensions/ms-toolsai.jupyter-2022.4.1021342353/temp/jupyter/kernels/python3105jvsc74a57bd0aee8b7b246df8f9039afb4144a1f6fd8d2ca17a180786b69acc140d282b71a49 bash /Users/baileysay/Library/Jupyter/kernels/bash java /Users/baileysay/Library/Jupyter/kernels/java javascript /Users/baileysay/Library/Jupyter/kernels/javascript python3 /Users/baileysay/opt/anaconda3/share/jupyter/kernels/python3
Checking Anaconda
conda list
# packages in environment at /Users/baileysay/opt/anaconda3: # # Name Version Build Channel _ipyw_jlab_nb_ext_conf 0.1.0 py39hecd8cb5_1 aiohttp 3.8.1 py39hca72f7f_1 aiosignal 1.2.0 pyhd3eb1b0_0 alabaster 0.7.12 pyhd3eb1b0_0 anaconda 2022.05 py39_0 anaconda-client 1.9.0 py39hecd8cb5_0 anaconda-navigator 2.1.4 py39hecd8cb5_0 anaconda-project 0.10.2 pyhd3eb1b0_0 anyio 3.5.0 py39hecd8cb5_0 appdirs 1.4.4 pyhd3eb1b0_0 applaunchservices 0.2.1 pyhd3eb1b0_0 appnope 0.1.2 py39hecd8cb5_1001 appscript 1.1.2 py39h9ed2024_0 argon2-cffi 21.3.0 pyhd3eb1b0_0 argon2-cffi-bindings 21.2.0 py39hca72f7f_0 arrow 1.2.2 pyhd3eb1b0_0 astroid 2.6.6 py39hecd8cb5_0 astropy 5.0.4 py39h67323c0_0 asttokens 2.0.5 pyhd3eb1b0_0 async-timeout 4.0.1 pyhd3eb1b0_0 atomicwrites 1.4.0 py_0 attrs 21.4.0 pyhd3eb1b0_0 automat 20.2.0 py_0 autopep8 1.6.0 pyhd3eb1b0_0 babel 2.9.1 pyhd3eb1b0_0 backcall 0.2.0 pyhd3eb1b0_0 backports 1.1 pyhd3eb1b0_0 backports.functools_lru_cache 1.6.4 pyhd3eb1b0_0 backports.tempfile 1.0 pyhd3eb1b0_1 backports.weakref 1.0.post1 py_1 bash-kernel 0.7.2 pypi_0 pypi bcrypt 3.2.0 py39h9ed2024_0 beautifulsoup4 4.11.1 py39hecd8cb5_0 binaryornot 0.4.4 pyhd3eb1b0_1 bitarray 2.4.1 py39hca72f7f_0 bkcharts 0.2 py39hecd8cb5_0 black 19.10b0 py_0 blas 1.0 mkl bleach 4.1.0 pyhd3eb1b0_0 blosc 1.21.0 h2842e9f_0 bokeh 2.4.2 py39hecd8cb5_0 boto3 1.21.32 pyhd3eb1b0_0 botocore 1.24.32 pyhd3eb1b0_0 bottleneck 1.3.4 py39h67323c0_0 brotli 1.0.9 hb1e8313_2 brotlipy 0.7.0 py39h9ed2024_1003 brunsli 0.1 h23ab428_0 bzip2 1.0.8 h1de35cc_0 c-ares 1.18.1 hca72f7f_0 ca-certificates 2022.3.29 hecd8cb5_1 cachetools 4.2.2 pyhd3eb1b0_0 certifi 2021.10.8 py39hecd8cb5_2 cffi 1.15.0 py39hc55c11b_1 cfitsio 3.470 hee0f690_6 chardet 4.0.0 py39hecd8cb5_1003 charls 2.2.0 h23ab428_0 charset-normalizer 2.0.4 pyhd3eb1b0_0 click 8.0.4 py39hecd8cb5_0 cloudpickle 2.0.0 pyhd3eb1b0_0 clyent 1.2.2 py39hecd8cb5_1 colorama 0.4.4 pyhd3eb1b0_0 colorcet 2.0.6 pyhd3eb1b0_0 conda 4.13.0 py39hecd8cb5_0 conda-build 3.21.8 py39hecd8cb5_2 conda-content-trust 0.1.1 pyhd3eb1b0_0 conda-env 2.6.0 1 conda-pack 0.6.0 pyhd3eb1b0_0 conda-package-handling 1.8.1 py39hca72f7f_0 conda-repo-cli 1.0.4 pyhd3eb1b0_0 conda-token 0.3.0 pyhd3eb1b0_0 conda-verify 3.4.2 py_1 constantly 15.1.0 pyh2b92418_0 cookiecutter 1.7.3 pyhd3eb1b0_0 cryptography 3.4.8 py39h2fd3fbb_0 cssselect 1.1.0 pyhd3eb1b0_0 curl 7.82.0 hca72f7f_0 cycler 0.11.0 pyhd3eb1b0_0 cython 0.29.28 py39he9d5cce_0 cytoolz 0.11.0 py39h9ed2024_0 daal4py 2021.5.0 py39h24a4e90_0 dal 2021.5.0 hecd8cb5_782 dask 2022.2.1 pyhd3eb1b0_0 dask-core 2022.2.1 pyhd3eb1b0_0 dataclasses 0.8 pyh6d0b6a4_7 datashader 0.13.0 pyhd3eb1b0_1 datashape 0.5.4 py39hecd8cb5_1 debugpy 1.5.1 py39he9d5cce_0 decorator 5.1.1 pyhd3eb1b0_0 defusedxml 0.7.1 pyhd3eb1b0_0 diff-match-patch 20200713 pyhd3eb1b0_0 distributed 2022.2.1 pyhd3eb1b0_0 docutils 0.17.1 py39hecd8cb5_1 entrypoints 0.4 py39hecd8cb5_0 et_xmlfile 1.1.0 py39hecd8cb5_0 executing 0.8.3 pyhd3eb1b0_0 filelock 3.6.0 pyhd3eb1b0_0 flake8 3.9.2 pyhd3eb1b0_0 flask 1.1.2 pyhd3eb1b0_0 fonttools 4.25.0 pyhd3eb1b0_0 freetype 2.11.0 hd8bbffd_0 frozenlist 1.2.0 py39hca72f7f_0 fsspec 2022.2.0 pyhd3eb1b0_0 future 0.18.2 py39hecd8cb5_1 gensim 4.1.2 py39he9d5cce_0 giflib 5.2.1 haf1e3a3_0 glob2 0.7 pyhd3eb1b0_0 gmp 6.2.1 h23ab428_2 gmpy2 2.1.2 py39hd5de756_0 google-api-core 1.25.1 pyhd3eb1b0_0 google-auth 1.33.0 pyhd3eb1b0_0 google-cloud-core 1.7.1 pyhd3eb1b0_0 google-cloud-storage 1.31.0 py_0 google-crc32c 1.1.2 py39h9ed2024_0 google-resumable-media 1.3.1 pyhd3eb1b0_1 googleapis-common-protos 1.53.0 py39hecd8cb5_0 greenlet 1.1.1 py39h23ab428_0 grpcio 1.42.0 py39ha29bfda_0 h5py 3.6.0 py39h4a1dd59_0 hdf5 1.10.6 hdbbcd12_0 heapdict 1.0.1 pyhd3eb1b0_0 holoviews 1.14.8 pyhd3eb1b0_0 hvplot 0.7.3 pyhd3eb1b0_1 hyperlink 21.0.0 pyhd3eb1b0_0 icu 58.2 h0a44026_3 idna 3.3 pyhd3eb1b0_0 imagecodecs 2021.8.26 py39ha952a84_0 imageio 2.9.0 pyhd3eb1b0_0 imagesize 1.3.0 pyhd3eb1b0_0 importlib-metadata 4.11.3 py39hecd8cb5_0 importlib_metadata 4.11.3 hd3eb1b0_0 incremental 21.3.0 pyhd3eb1b0_0 inflection 0.5.1 py39hecd8cb5_0 iniconfig 1.1.1 pyhd3eb1b0_0 intake 0.6.5 pyhd3eb1b0_0 intel-openmp 2021.4.0 hecd8cb5_3538 intervaltree 3.1.0 pyhd3eb1b0_0 ipykernel 6.9.1 py39hecd8cb5_0 ipython 8.2.0 py39hecd8cb5_0 ipython_genutils 0.2.0 pyhd3eb1b0_1 ipywidgets 7.6.5 pyhd3eb1b0_1 isort 5.9.3 pyhd3eb1b0_0 itemadapter 0.3.0 pyhd3eb1b0_0 itemloaders 1.0.4 pyhd3eb1b0_1 itsdangerous 2.0.1 pyhd3eb1b0_0 jdcal 1.4.1 pyhd3eb1b0_0 jedi 0.18.1 py39hecd8cb5_1 jinja2 2.11.3 pyhd3eb1b0_0 jinja2-time 0.2.0 pyhd3eb1b0_3 jmespath 0.10.0 pyhd3eb1b0_0 joblib 1.1.0 pyhd3eb1b0_0 jpeg 9e hca72f7f_0 jq 1.6 h9ed2024_1000 json5 0.9.6 pyhd3eb1b0_0 jsonschema 4.4.0 py39hecd8cb5_0 jupyter 1.0.0 py39hecd8cb5_7 jupyter_client 6.1.12 pyhd3eb1b0_0 jupyter_console 6.4.0 pyhd3eb1b0_0 jupyter_core 4.9.2 py39hecd8cb5_0 jupyter_server 1.13.5 pyhd3eb1b0_0 jupyterlab 3.3.2 pyhd3eb1b0_0 jupyterlab_pygments 0.1.2 py_0 jupyterlab_server 2.10.3 pyhd3eb1b0_1 jupyterlab_widgets 1.0.0 pyhd3eb1b0_1 jxrlib 1.1 haf1e3a3_2 keyring 23.4.0 py39hecd8cb5_0 kiwisolver 1.3.2 py39he9d5cce_0 krb5 1.19.2 hcd88c3b_0 lazy-object-proxy 1.6.0 py39h9ed2024_0 lcms2 2.12 hf1fd2bf_0 lerc 3.0 he9d5cce_0 libaec 1.0.4 hb1e8313_1 libarchive 3.4.2 haa3ed63_0 libcrc32c 1.1.1 hb1e8313_2 libcurl 7.82.0 h6dfd666_0 libcxx 12.0.0 h2f01273_0 libdeflate 1.8 h9ed2024_5 libedit 3.1.20210910 hca72f7f_0 libev 4.33 h9ed2024_1 libffi 3.3 hb1e8313_2 libgfortran 3.0.1 h93005f0_2 libiconv 1.16 hca72f7f_2 libidn2 2.3.2 h9ed2024_0 liblief 0.11.5 he9d5cce_1 libllvm11 11.1.0 h46f1229_1 libnghttp2 1.46.0 ha29bfda_0 libpng 1.6.37 ha441bb4_0 libprotobuf 3.19.1 h8346a28_0 libsodium 1.0.18 h1de35cc_0 libspatialindex 1.9.3 h23ab428_0 libssh2 1.10.0 h0a4fc7d_0 libtiff 4.2.0 h87d7836_0 libunistring 0.9.10 h9ed2024_0 libwebp 1.2.2 h56c3ce4_0 libwebp-base 1.2.2 hca72f7f_0 libxml2 2.9.12 hcdb78fc_0 libxslt 1.1.34 h83b36ba_0 libzopfli 1.0.3 hb1e8313_0 llvm-openmp 12.0.0 h0dcd299_1 llvmlite 0.38.0 py39h8346a28_0 locket 0.2.1 py39hecd8cb5_2 lxml 4.8.0 py39h65b224f_0 lz4-c 1.9.3 h23ab428_1 lzo 2.10 haf1e3a3_2 markdown 3.3.4 py39hecd8cb5_0 markupsafe 2.0.1 py39h9ed2024_0 matplotlib 3.5.1 py39hecd8cb5_1 matplotlib-base 3.5.1 py39hfb0c5b7_1 matplotlib-inline 0.1.2 pyhd3eb1b0_2 mccabe 0.6.1 py39hecd8cb5_1 mistune 0.8.4 py39h9ed2024_1000 mkl 2021.4.0 hecd8cb5_637 mkl-service 2.4.0 py39h9ed2024_0 mkl_fft 1.3.1 py39h4ab4a9b_0 mkl_random 1.2.2 py39hb2f4e1b_0 mock 4.0.3 pyhd3eb1b0_0 mpc 1.1.0 h6ef4df4_1 mpfr 4.0.2 h9066e36_1 mpi 1.0 mpich mpich 3.3.2 hc856adb_0 mpmath 1.2.1 py39hecd8cb5_0 msgpack-python 1.0.2 py39hf7b0b51_1 multidict 5.2.0 py39hca72f7f_2 multipledispatch 0.6.0 py39hecd8cb5_0 munkres 1.1.4 py_0 mypy_extensions 0.4.3 py39hecd8cb5_1 navigator-updater 0.2.1 py39_1 nbclassic 0.3.5 pyhd3eb1b0_0 nbclient 0.5.13 py39hecd8cb5_0 nbconvert 6.4.4 py39hecd8cb5_0 nbformat 5.3.0 py39hecd8cb5_0 nbstripout 0.6.0 pypi_0 pypi ncurses 6.3 hca72f7f_2 nest-asyncio 1.5.5 py39hecd8cb5_0 networkx 2.7.1 pyhd3eb1b0_0 nltk 3.7 pyhd3eb1b0_0 nodejs 10.13.0 h0a44026_0 nose 1.3.7 pyhd3eb1b0_1008 notebook 6.4.8 py39hecd8cb5_0 numba 0.55.1 py39hae1ba45_0 numexpr 2.8.1 py39h2e5f0a9_0 numpy 1.21.5 py39h2e5f0a9_1 numpy-base 1.21.5 py39h3b1a694_1 numpydoc 1.2 pyhd3eb1b0_0 olefile 0.46 pyhd3eb1b0_0 oniguruma 6.9.7.1 h9ed2024_0 openjpeg 2.4.0 h66ea3da_0 openpyxl 3.0.9 pyhd3eb1b0_0 openssl 1.1.1n hca72f7f_0 packaging 21.3 pyhd3eb1b0_0 pandas 1.4.2 py39he9d5cce_0 pandocfilters 1.5.0 pyhd3eb1b0_0 panel 0.13.0 py39hecd8cb5_0 param 1.12.0 pyhd3eb1b0_0 parsel 1.6.0 py39hecd8cb5_0 parso 0.8.3 pyhd3eb1b0_0 partd 1.2.0 pyhd3eb1b0_1 pathspec 0.7.0 py_0 patsy 0.5.2 py39hecd8cb5_1 pep8 1.7.1 py39hecd8cb5_0 pexpect 4.8.0 pyhd3eb1b0_3 pickleshare 0.7.5 pyhd3eb1b0_1003 pillow 9.0.1 py39hde71d04_0 pip 21.2.4 py39hecd8cb5_0 pkginfo 1.8.2 pyhd3eb1b0_0 plotly 5.6.0 pyhd3eb1b0_0 pluggy 1.0.0 py39hecd8cb5_1 poyo 0.5.0 pyhd3eb1b0_0 prometheus_client 0.13.1 pyhd3eb1b0_0 prompt-toolkit 3.0.20 pyhd3eb1b0_0 prompt_toolkit 3.0.20 hd3eb1b0_0 protego 0.1.16 py_0 protobuf 3.19.1 py39he9d5cce_0 psutil 5.8.0 py39h9ed2024_1 ptyprocess 0.7.0 pyhd3eb1b0_2 pure_eval 0.2.2 pyhd3eb1b0_0 py 1.11.0 pyhd3eb1b0_0 py-lief 0.11.5 py39he9d5cce_1 pyasn1 0.4.8 pyhd3eb1b0_0 pyasn1-modules 0.2.8 py_0 pycodestyle 2.7.0 pyhd3eb1b0_0 pycosat 0.6.3 py39h9ed2024_0 pycparser 2.21 pyhd3eb1b0_0 pyct 0.4.6 py39hecd8cb5_0 pycurl 7.44.1 py39hbcfaee0_1 pydispatcher 2.0.5 py39hecd8cb5_2 pydocstyle 6.1.1 pyhd3eb1b0_0 pyerfa 2.0.0 py39h9ed2024_0 pyflakes 2.3.1 pyhd3eb1b0_0 pygments 2.11.2 pyhd3eb1b0_0 pyhamcrest 2.0.2 pyhd3eb1b0_2 pyjwt 2.1.0 py39hecd8cb5_0 pylint 2.9.6 py39hecd8cb5_1 pyls-spyder 0.4.0 pyhd3eb1b0_0 pyodbc 4.0.32 py39he9d5cce_1 pyopenssl 21.0.0 pyhd3eb1b0_1 pyparsing 3.0.4 pyhd3eb1b0_0 pyqt 5.9.2 py39h23ab428_6 pyrsistent 0.18.0 py39hca72f7f_0 pysocks 1.7.1 py39hecd8cb5_0 pytables 3.6.1 py39h648f197_1 pytest 7.1.1 py39hecd8cb5_0 python 3.9.12 hdfd78df_0 python-dateutil 2.8.2 pyhd3eb1b0_0 python-fastjsonschema 2.15.1 pyhd3eb1b0_0 python-libarchive-c 2.9 pyhd3eb1b0_1 python-lsp-black 1.0.0 pyhd3eb1b0_0 python-lsp-jsonrpc 1.0.0 pyhd3eb1b0_0 python-lsp-server 1.2.4 pyhd3eb1b0_0 python-slugify 5.0.2 pyhd3eb1b0_0 python-snappy 0.6.0 py39h23ab428_3 python.app 3 py39hca72f7f_0 pytz 2021.3 pyhd3eb1b0_0 pyviz_comms 2.0.2 pyhd3eb1b0_0 pywavelets 1.3.0 py39hca72f7f_0 pyyaml 6.0 py39hca72f7f_1 pyzmq 22.3.0 py39he9d5cce_2 qdarkstyle 3.0.2 pyhd3eb1b0_0 qstylizer 0.1.10 pyhd3eb1b0_0 qt 5.9.7 h468cd18_1 qtawesome 1.0.3 pyhd3eb1b0_0 qtconsole 5.3.0 pyhd3eb1b0_0 qtpy 2.0.1 pyhd3eb1b0_0 queuelib 1.5.0 py39hecd8cb5_0 readline 8.1.2 hca72f7f_1 regex 2022.3.15 py39hca72f7f_0 requests 2.27.1 pyhd3eb1b0_0 requests-file 1.5.1 pyhd3eb1b0_0 ripgrep 12.1.1 0 rope 0.22.0 pyhd3eb1b0_0 rsa 4.7.2 pyhd3eb1b0_1 rtree 0.9.7 py39hecd8cb5_1 ruamel_yaml 0.15.100 py39h9ed2024_0 s3transfer 0.5.0 pyhd3eb1b0_0 scikit-image 0.19.2 py39hae1ba45_0 scikit-learn 1.0.2 py39hae1ba45_1 scikit-learn-intelex 2021.5.0 py39hecd8cb5_0 scipy 1.7.3 py39h8c7af03_0 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